Taxonomy Table for Fungal Genomes

From Fungal Genomics

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(Created page with 'Note: This tree is based on information from the NCBI Taxonomy Browser <table cellpadding=5 border=1> <tr> <td rowspan=3> <b>Fungi</b> </td> <td rowspan=2> <b>->Dikarya</b> </t…')
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Note: This tree is based on information from the NCBI Taxonomy Browser  
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{{Header_links}}
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===Species of interest for the Genozymes project===
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NOTE: This tree is based on information from the NCBI Taxonomy Browser, MycoBank and Index Fungorum and new phylogeny studies in our group. Genomic sequencing is in progress as part of the Genozymes project for species followed by asterisk. New genome sequences released on the public site are shown in bold.
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 +
<table cellpadding=6 border=1>
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<tr><th>Phylum</th><th>Class</th><th>Order</th><th>Name</th></tr>
 +
 
 +
<tr> <!-- first phylum -->
 +
<td rowspan=9>
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<b>->Ascomycota</b>
 +
</td>
 +
 
 +
<td>
 +
<b>->Dothideomycetes</b>
 +
</td>
 +
<td>
 +
<b>->Dothidiales</b>
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</td>
 +
<td>
 +
<b>Aureobasidium pullulans ATCC 62921</b> *
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</td>
 +
</tr>
-
<table cellpadding=5 border=1>
 
<tr>
<tr>
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<td rowspan=2>
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<b>->Eurotiomycetes</b>
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</td>
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<td>
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<b>->Eurotiales</b>
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</td>
 +
<td>
 +
Aspergillus niger ATCC 1015
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Aspergillus_niger_NRRL3_description.html Aspergillus niger NRRL3]</b> *
 +
<br> <b>Rasamsonia byssochlamydoides NRRL 3658</b> *
 +
(was Paecilomyces byssochlamydoides)
 +
<br> Rasamsonia emersonii NRRL 3221 *
 +
(was Talaromyces emersonii)
 +
<br> <b>Thermoascus crustaceus CBS 181.67</b> *
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(was [http://genome.fungalgenomics.ca/species/Thermoascus_aurantiacus_final_img.html Thermoascus aurantiacus])
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<br> Thermoascus thermophilus ATCC 26413 *
 +
(was Dactylomyces thermophilus)
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<br> <b>Thermomyces dupontii NRRL 2155</b> *
 +
(was [http://genome.fungalgenomics.ca/species/Talaromyces_thermophilus_final_img.html Talaromyces thermophilus])
 +
<br> Thermomyces ibadanensis ATCC 22716
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Thermomyces_lanuginosus_final_img.html Thermomyces lanuginosus] ATCC 200065</b> *
 +
 +
</td>
 +
</tr>
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<tr>
 +
<td>
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<b>->Onygenales</b>
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</td>
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<td>
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<b>Malbranchea cinnamomea CBS 343.55</b> *
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</td>
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</tr>
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 +
<tr>
 +
<td>
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<b>->Leotiomycetes</b>
 +
</td>
 +
<td>
 +
<b>->Helotiales</b>
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</td>
 +
<td>
 +
<b>[http://genome.fungalgenomics.ca/species/Amorphotheca_resinae_final_img.html Amorphotheca resinae] DAOM194228</b> *
 +
<br> <b>Pseudocercosporella herpotrichoides CBS 494.80</b> *
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(Oculimacula yallundae)
 +
 +
</td>
 +
</tr>
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 +
<tr>
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<td rowspan=5>
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<b>->Sordariomycetes</b>
 +
</td>
 +
 +
<td>
 +
<b>->Sordariales</b>
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</td>
 +
<td>
 +
Chaetomium globosum CBS 148.51
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<br>Chaetomium olivicolor CBS 102434 *
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<br> <b>Chaetomium thermophilum var. coprophilum ATCC 16451</b> *
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<br> <b>Myceliophthora fergusii CBS 405.69</b> *
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(was [http://genome.fungalgenomics.ca/species/Corynascus_thermophilus_final_img.html  Corynascus thermophilus])
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<br> <b>Myceliophthora sepedonium ATCC 9787</b> *
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(was Corynascus sepedonium)
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<br> Humicola hyalothermophila CBS 454.80 *
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<br> Myceliophthora hinnulea ATCC 52474 *
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<br>[http://genome.fungalgenomics.ca/species/Myceliophthora_thermophila_final_img.html Myceliophthora thermophila ATCC 42464]
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(was Sporotrichum thermophilum)
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Myriococcum_thermophilum_final_img.html Myriococcum thermophilum] CBS 398.93</b> *
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<br> Remersonia thermophila ATCC 22073 *
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(was Stilbella thermophila)
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<br> <b>[http://genome.fungalgenomics.ca/species/Scytalidium_thermophilum_final_img.html Scytalidium thermophilum] CBS 625.91</b> *
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<br> <b>Thielavia australiensis ATCC 28236</b> *
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<br> Thielavia terrestris NRRL 8126
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</td>
 +
</tr>
 +
 +
<tr>
 +
<td>
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<b>->Glomerellales</b>
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</td>
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<td>
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[http://genome.fungalgenomics.ca/species/Acremonium_alcalophilum_final_img.html Acremonium alcalophilum] JCM 7366
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</td>
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</tr>
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 +
<tr>
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<td>
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<b>->Hypocreales</b>
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</td>
 +
<td>
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Trichoderma reesei ATCC 56765
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</td>
 +
</tr>
 +
 +
<tr>
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<td>
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<b>->Ophiostomatales</b>
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</td>
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<td>
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Ophiostoma piliferum FCC 55A
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</td>
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</tr>
 +
 +
<tr>
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<td>
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<b>->unknown</b>
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</td>
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<td>
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Acremonium thermophilum ATCC 24622 *
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<br> <b>Thermomyces stellatus CBS 241.64</b> *
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</td>
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</tr>
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 +
<tr> <!-- next phylum -->
<td rowspan=3>
<td rowspan=3>
-
<b>Fungi</b>
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<b>->Basidiomycota</b>
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</td>
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<td rowspan=3>
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<b>->Agaricomycetes</b>
 +
</td>
 +
<td>
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<b>->Agaricales</b>
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</td>
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<td>
 +
Agaricus bisporus var. burnetti JB137-S8
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<br> [http://genome.fungalgenomics.ca/species/Lentinula_edodes_final_img.html Lentinula edodes] ATCC 48564 *
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<br> Pleurotus ostreatus PC 15
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</td>
 +
</tr>
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 +
<tr>
 +
<td>
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<b>->Gloeophyllales</b>
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</td>
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<td>
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[http://genome.fungalgenomics.ca/species/Gloeophyllum_trabeum_final_img.html Gloeophyllum trabeum] ATCC 11539
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</td>
 +
</tr>
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 +
<tr>
 +
<td>
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<b>->Polyporales</b>
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</td>
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<td>
 +
Phanerochaete chrysosporium RP78
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<br> <b>[http://genome.fungalgenomics.ca/species/Trametes_versicolor_final_img.html  Trametes versicolor] ATCC 20869</b> *
 +
</td>
 +
</tr>
 +
 
 +
<tr> <!-- next phylum -->
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<td>
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<b>->Neocallimastigomycota</b>
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</td>
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<td>
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<b>->Neocallimastigomycetes</b>
 +
<td>
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<b>->Neocallimastigales</b>
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</td>
 +
<td>
 +
Anaeromyces mucronatus YE505
 +
<br> Neocallimastix patriciarum 27
 +
<br> Neocallimastix joyonii SG4 (Orpinomyces joyonii)
 +
<br> Piromyces rhizinflata YM600
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</td>
 +
</tr>
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 +
<tr> <!-- next phylum -->
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<td rowspan=2>
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<b>->Mucoromycotina subphylum <br>(was Zygomycota)</b>
</td>
</td>
<td rowspan=2>
<td rowspan=2>
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<b>->Dikarya</b>
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<b>->Incertae sedis</b>
</td>
</td>
<td>
<td>
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<b>->Ascomycota</b>
+
<b>->Mucorales</b>
</td>
</td>
<td>
<td>
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    <br> [http://findlayw.fungalgenomics.ca/species/Description_Myceliophthora_v2.html Myceliophthora thermophila] (Sporotrichum thermophile)
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Phycomyces blakesleeanus NRRL1555
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    <br> Acremonium alcalophilum
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<br> Rhizomucor miehei CBS 182.67 *
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    <br> Aspergillus niger
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<br> <b>Rhizomucor pusillus CBS 183.67</b> *
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    <br> Chaetomium globosum
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<br> Rhizopus orzae RA 99-880
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    <br> Thielavia terrestris
+
-
    <br> Thermomyces lanuginosus
+
-
    <br> Amorphotheca resinae
+
-
    <br> Aureobasidium pullulans
+
-
    <br> Ophiostoma piliferum
+
-
    <br> Corynascus thermophilus
+
-
    <br> Pseudocercosporella herpotrichoides
+
-
    <br> Talaromyces thermophilus
+
-
    <br> Thermoascus aurantiacus
+
-
    <br> Thermomyces ibadanensis
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</td>
</td>
</tr>
</tr>
<tr>
<tr>
<td>
<td>
-
<b>->Basidiomycota</b>
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<b>->Incertae sedis</b>
</td>
</td>
<td>
<td>
-
    <br> Myriococcum thermophilum  
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<b>[http://genome.fungalgenomics.ca/species/Calcarisporiella_thermophila_final_img.html Calcarisporiella thermophilum] CBS 279.70</b> *
 +
</td>
 +
</tr>
 +
</table>
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    <br> Gloeophyllum trabeum
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===Oomycetes===
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    <br> Lentinula edodes
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<table cellpadding=5 border=1 width=100%>
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    <br> Trametes versicolor
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<tr>
 +
<td rowspan=3>
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<b>->Oomycota</b>
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</td>
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<td rowspan=3>
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<b>->Oomycetes</b>
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</td>
 +
<td>
 +
<b>->Peronosporales</b>
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</td>
 +
<td width="40%">
 +
Phytophthora cinnamomi
</td>
</td>
</tr>
</tr>
<tr>
<tr>
<td>
<td>
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<b>->Fungi incertae sedis</b>
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<b>->Pythiales</b>
</td>
</td>
<td>
<td>
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<b>->Mucoromycotina</b>
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Pythium aphanidermatum
 +
</td>
 +
</tr>
 +
<tr>
 +
<td>
 +
<b>->Saprolegniales</b>
</td>
</td>
<td>
<td>
-
    <br> Rhizomucor miehei
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Aphanomyces cochlioides
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    <br> Rhizomucor pusillus
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</td>
</td>
</tr>
</tr>
</table>
</table>

Latest revision as of 17:59, 4 September 2014

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Species of interest for the Genozymes project

NOTE: This tree is based on information from the NCBI Taxonomy Browser, MycoBank and Index Fungorum and new phylogeny studies in our group. Genomic sequencing is in progress as part of the Genozymes project for species followed by asterisk. New genome sequences released on the public site are shown in bold.

PhylumClassOrderName

->Ascomycota

->Dothideomycetes

->Dothidiales

Aureobasidium pullulans ATCC 62921 *

->Eurotiomycetes

->Eurotiales

Aspergillus niger ATCC 1015
Aspergillus niger NRRL3 *
Rasamsonia byssochlamydoides NRRL 3658 * (was Paecilomyces byssochlamydoides)
Rasamsonia emersonii NRRL 3221 * (was Talaromyces emersonii)
Thermoascus crustaceus CBS 181.67 * (was Thermoascus aurantiacus)
Thermoascus thermophilus ATCC 26413 * (was Dactylomyces thermophilus)
Thermomyces dupontii NRRL 2155 * (was Talaromyces thermophilus)
Thermomyces ibadanensis ATCC 22716
Thermomyces lanuginosus ATCC 200065 *

->Onygenales

Malbranchea cinnamomea CBS 343.55 *

->Leotiomycetes

->Helotiales

Amorphotheca resinae DAOM194228 *
Pseudocercosporella herpotrichoides CBS 494.80 * (Oculimacula yallundae)

->Sordariomycetes

->Sordariales

Chaetomium globosum CBS 148.51
Chaetomium olivicolor CBS 102434 *
Chaetomium thermophilum var. coprophilum ATCC 16451 *
Myceliophthora fergusii CBS 405.69 * (was Corynascus thermophilus)
Myceliophthora sepedonium ATCC 9787 * (was Corynascus sepedonium)
Humicola hyalothermophila CBS 454.80 *
Myceliophthora hinnulea ATCC 52474 *
Myceliophthora thermophila ATCC 42464 (was Sporotrichum thermophilum)
Myriococcum thermophilum CBS 398.93 *
Remersonia thermophila ATCC 22073 * (was Stilbella thermophila)
Scytalidium thermophilum CBS 625.91 *
Thielavia australiensis ATCC 28236 *
Thielavia terrestris NRRL 8126

->Glomerellales

Acremonium alcalophilum JCM 7366

->Hypocreales

Trichoderma reesei ATCC 56765

->Ophiostomatales

Ophiostoma piliferum FCC 55A

->unknown

Acremonium thermophilum ATCC 24622 *
Thermomyces stellatus CBS 241.64 *

->Basidiomycota

->Agaricomycetes

->Agaricales

Agaricus bisporus var. burnetti JB137-S8
Lentinula edodes ATCC 48564 *
Pleurotus ostreatus PC 15

->Gloeophyllales

Gloeophyllum trabeum ATCC 11539

->Polyporales

Phanerochaete chrysosporium RP78
Trametes versicolor ATCC 20869 *

->Neocallimastigomycota

->Neocallimastigomycetes

->Neocallimastigales

Anaeromyces mucronatus YE505
Neocallimastix patriciarum 27
Neocallimastix joyonii SG4 (Orpinomyces joyonii)
Piromyces rhizinflata YM600

->Mucoromycotina subphylum
(was Zygomycota)

->Incertae sedis

->Mucorales

Phycomyces blakesleeanus NRRL1555
Rhizomucor miehei CBS 182.67 *
Rhizomucor pusillus CBS 183.67 *
Rhizopus orzae RA 99-880

->Incertae sedis

Calcarisporiella thermophilum CBS 279.70 *

Oomycetes

->Oomycota

->Oomycetes

->Peronosporales

Phytophthora cinnamomi

->Pythiales

Pythium aphanidermatum

->Saprolegniales

Aphanomyces cochlioides

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