Taxonomy Table for Fungal Genomes

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{{Header_links}}
{{Header_links}}
-
NOTE: This tree is based on information from the NCBI Taxonomy Browser, MycoBank and Index Fungorum. For the species shown in bold, the genome sequence is already publicly available (or will be soon).
+
===Species of interest for the Genozymes project===
 +
NOTE: This tree is based on information from the NCBI Taxonomy Browser, MycoBank and Index Fungorum and new phylogeny studies in our group. Genomic sequencing is in progress as part of the Genozymes project for species followed by asterisk. New genome sequences released on the public site are shown in bold.
-
<table cellpadding=5 border=1>
+
<table cellpadding=6 border=1>
-
<tr>
+
<tr><th>Phylum</th><th>Class</th><th>Order</th><th>Name</th></tr>
 +
 
 +
<tr> <!-- first phylum -->
<td rowspan=9>
<td rowspan=9>
<b>->Ascomycota</b>
<b>->Ascomycota</b>
</td>
</td>
 +
<td>
<td>
-
<b>->Ascomycetes</b>
+
<b>->Dothideomycetes</b>
</td>
</td>
<td>
<td>
-
<b>->Incertae sedis</b>
+
<b>->Dothidiales</b>
</td>
</td>
<td>
<td>
-
Amorphotheca resinae DAOM194228
+
<b>Aureobasidium pullulans ATCC 62921</b> *
-
<br> Myriococcum thermophilum CBS 398.93
+
-
 
+
</td>
</td>
</tr>
</tr>
Line 22: Line 24:
<tr>
<tr>
<td rowspan=2>
<td rowspan=2>
-
<b>->Dothideomycetes</b>
+
<b>->Eurotiomycetes</b>
</td>
</td>
<td>
<td>
-
<b>->Dothidiales</b>
+
<b>->Eurotiales</b>
</td>
</td>
<td>
<td>
-
Aureobasidium pullulans ATCC 62921
+
Aspergillus niger ATCC 1015
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Aspergillus_niger_NRRL3_description.html Aspergillus niger NRRL3]</b> *
 +
<br> <b>Rasamsonia byssochlamydoides NRRL 3658</b> *
 +
(was Paecilomyces byssochlamydoides)
 +
<br> Rasamsonia emersonii NRRL 3221 *
 +
(was Talaromyces emersonii)
 +
<br> <b>Thermoascus crustaceus CBS 181.67</b> *
 +
(was [http://genome.fungalgenomics.ca/species/Thermoascus_aurantiacus_final_img.html Thermoascus aurantiacus])
 +
<br> Thermoascus thermophilus ATCC 26413 *
 +
(was Dactylomyces thermophilus)
 +
<br> <b>Thermomyces dupontii NRRL 2155</b> *
 +
(was [http://genome.fungalgenomics.ca/species/Talaromyces_thermophilus_final_img.html Talaromyces thermophilus])
 +
<br> Thermomyces ibadanensis ATCC 22716
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Thermomyces_lanuginosus_final_img.html Thermomyces lanuginosus] ATCC 200065</b> *
 +
 
</td>
</td>
</tr>
</tr>
<tr>
<tr>
<td>
<td>
-
<b>->Capnodiales</b>
+
<b>->Onygenales</b>
</td>
</td>
<td>
<td>
-
Ramulispora herpotrichoides (Cercosporella herpotrichoides)
+
<b>Malbranchea cinnamomea CBS 343.55</b> *
</td>
</td>
</tr>
</tr>
Line 42: Line 58:
<tr>
<tr>
<td>
<td>
-
<b>->Eurotiomycetes</b>
+
<b>->Leotiomycetes</b>
</td>
</td>
<td>
<td>
-
<b>->Eurotiales</b>
+
<b>->Helotiales</b>
</td>
</td>
<td>
<td>
-
<b> Aspergillus niger ATCC 1015</b>
+
<b>[http://genome.fungalgenomics.ca/species/Amorphotheca_resinae_final_img.html Amorphotheca resinae] DAOM194228</b> *
-
<br> Talaromyces thermophilus NRRL 2155
+
<br> <b>Pseudocercosporella herpotrichoides CBS 494.80</b> *
-
<br> Thermoascus aurantiacus CBS 181.67
+
(Oculimacula yallundae)
-
<br> Thermomyces lanuginosus ATCC 200065
+
 
-
<br> Thermomyces ibadanensis ATCC 22716
+
</td>
</td>
</tr>
</tr>
<tr>
<tr>
-
<td>
+
<td rowspan=5>
-
<b>->Incertae sedis</b>
+
<b>->Sordariomycetes</b>
</td>
</td>
 +
<td>
<td>
-
<b>->Incertae sedis</b>
+
<b>->Sordariales</b>
</td>
</td>
<td>
<td>
-
Calcarisporium thermophilum CBS 279.70 (Calcarisporiella thermophila)
+
Chaetomium globosum CBS 148.51
 +
<br>Chaetomium olivicolor CBS 102434 *
 +
<br> <b>Chaetomium thermophilum var. coprophilum ATCC 16451</b> *
 +
<br> <b>Myceliophthora fergusii CBS 405.69</b> *
 +
(was [http://genome.fungalgenomics.ca/species/Corynascus_thermophilus_final_img.html  Corynascus thermophilus])
 +
<br> <b>Myceliophthora sepedonium ATCC 9787</b> *
 +
(was Corynascus sepedonium)
 +
<br> Humicola hyalothermophila CBS 454.80 *
 +
<br> Myceliophthora hinnulea ATCC 52474 *
 +
<br>[http://genome.fungalgenomics.ca/species/Myceliophthora_thermophila_final_img.html Myceliophthora thermophila ATCC 42464]
 +
(was Sporotrichum thermophilum)
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Myriococcum_thermophilum_final_img.html Myriococcum thermophilum] CBS 398.93</b> *
 +
<br> Remersonia thermophila ATCC 22073 *
 +
(was Stilbella thermophila)
 +
<br> <b>[http://genome.fungalgenomics.ca/species/Scytalidium_thermophilum_final_img.html Scytalidium thermophilum] CBS 625.91</b> *
 +
<br> <b>Thielavia australiensis ATCC 28236</b> *
 +
<br> Thielavia terrestris NRRL 8126
</td>
</td>
</tr>
</tr>
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<tr>
<tr>
<td>
<td>
-
<b>->Leotiomycetes</b>
+
<b>->Glomerellales</b>
</td>
</td>
<td>
<td>
-
<b>->Helotiales</b>
+
[http://genome.fungalgenomics.ca/species/Acremonium_alcalophilum_final_img.html Acremonium alcalophilum] JCM 7366
-
</td>
+
-
<td>
+
-
Pseudocercosporella herpotrichoides var. herpotrichoides CBS 494.80
+
-
<br>Ramulispora herpotrichoides (Oculimacula yallundae)
+
-
<br>Scytalidium thermophilum
+
</td>
</td>
</tr>
</tr>
<tr>
<tr>
-
<td rowspan=3>
 
-
<b>->Sordariomycetes</b>
 
-
</td>
 
<td>
<td>
-
<b>->Sordariales</b>
+
<b>->Hypocreales</b>
</td>
</td>
<td>
<td>
-
'''[http://www.fungalgenomics.ca/html/Description_Myceliophthora_v2.html Myceliophthora thermophila ATCC 42464] '''(Sporotrichum thermophile)'''
+
Trichoderma reesei ATCC 56765
-
<br> <b>Chaetomium globosum</b>
+
-
<br> Corynascus thermophilus CBS 405.69
+
-
<br> <b>Thielavia terrestris NRRL 8126</b>
+
</td>
</td>
</tr>
</tr>
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<tr>
<tr>
<td>
<td>
-
<b>->Hypocreales</b>
+
<b>->Ophiostomatales</b>
</td>
</td>
<td>
<td>
-
<b>Acremonium alcalophilum JCM 7366 </b>
+
Ophiostoma piliferum FCC 55A
</td>
</td>
</tr>
</tr>
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<tr>
<tr>
<td>
<td>
-
<b>->Ophiostomatales</b>
+
<b>->unknown</b>
</td>
</td>
<td>
<td>
-
Ophiostoma piliferum FCC 55A
+
Acremonium thermophilum ATCC 24622 *
 +
<br> <b>Thermomyces stellatus CBS 241.64</b> *
</td>
</td>
</tr>
</tr>
-
<tr>
+
<tr> <!-- next phylum -->
<td rowspan=3>
<td rowspan=3>
<b>->Basidiomycota</b>
<b>->Basidiomycota</b>
</td>
</td>
-
<td rowspan=2>
+
<td rowspan=3>
<b>->Agaricomycetes</b>
<b>->Agaricomycetes</b>
</td>
</td>
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</td>
</td>
<td>
<td>
-
<b>Agaricus bisporus var. burnetti JB137-S8</b>
+
Agaricus bisporus var. burnetti JB137-S8
-
<br> Lentinula edodes ATCC 48564
+
<br> [http://genome.fungalgenomics.ca/species/Lentinula_edodes_final_img.html Lentinula edodes] ATCC 48564 *
-
<br> <b>Pleurotus ostreatus PC 15</b>
+
<br> Pleurotus ostreatus PC 15
</td>
</td>
</tr>
</tr>
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</td>
</td>
<td>
<td>
-
<b>Gloeophyllum trabeum ATCC 11539</b>
+
[http://genome.fungalgenomics.ca/species/Gloeophyllum_trabeum_final_img.html Gloeophyllum trabeum] ATCC 11539
</td>
</td>
</tr>
</tr>
<tr>
<tr>
-
<td>
 
-
<b>->Basidiomycetes</b>
 
-
</td>
 
<td>
<td>
<b>->Polyporales</b>
<b>->Polyporales</b>
</td>
</td>
<td>
<td>
-
<b>Phanerochaete chrysosporium RP78</b>
+
Phanerochaete chrysosporium RP78
-
<br> Trametes versicolor ATCC 20869
+
<br> <b>[http://genome.fungalgenomics.ca/species/Trametes_versicolor_final_img.html  Trametes versicolor] ATCC 20869</b> *
</td>
</td>
</tr>
</tr>
-
<tr>
+
<tr> <!-- next phylum -->
<td>
<td>
<b>->Neocallimastigomycota</b>
<b>->Neocallimastigomycota</b>
Line 164: Line 183:
</td>
</td>
<td>
<td>
-
Neocallimastix patriciarum 27
+
Anaeromyces mucronatus YE505
 +
<br> Neocallimastix patriciarum 27
<br> Neocallimastix joyonii SG4 (Orpinomyces joyonii)
<br> Neocallimastix joyonii SG4 (Orpinomyces joyonii)
<br> Piromyces rhizinflata YM600
<br> Piromyces rhizinflata YM600
Line 170: Line 190:
</tr>
</tr>
 +
<tr> <!-- next phylum -->
 +
<td rowspan=2>
 +
<b>->Mucoromycotina subphylum <br>(was Zygomycota)</b>
 +
</td>
 +
<td rowspan=2>
 +
<b>->Incertae sedis</b>
 +
</td>
 +
<td>
 +
<b>->Mucorales</b>
 +
</td>
 +
<td>
 +
Phycomyces blakesleeanus NRRL1555
 +
<br> Rhizomucor miehei CBS 182.67 *
 +
<br> <b>Rhizomucor pusillus CBS 183.67</b> *
 +
<br> Rhizopus orzae RA 99-880
 +
</td>
 +
</tr>
 +
<tr>
 +
<td>
 +
<b>->Incertae sedis</b>
 +
</td>
 +
<td>
 +
<b>[http://genome.fungalgenomics.ca/species/Calcarisporiella_thermophila_final_img.html Calcarisporiella thermophilum] CBS 279.70</b> *
 +
</td>
 +
</tr>
 +
</table>
 +
 +
===Oomycetes===
 +
<table cellpadding=5 border=1 width=100%>
<tr>
<tr>
<td rowspan=3>
<td rowspan=3>
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<b>->Peronosporales</b>
<b>->Peronosporales</b>
</td>
</td>
-
<td>
+
<td width="40%">
Phytophthora cinnamomi
Phytophthora cinnamomi
</td>
</td>
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</td>
</td>
</tr>
</tr>
-
 
-
<tr>
 
-
<td>
 
-
<b>->Zygomycota</b>
 
-
</td>
 
-
<td>
 
-
<b>->Incertae sedis</b>
 
-
</td>
 
-
<td>
 
-
<b>->Mucorales</b>
 
-
</td>
 
-
<td>
 
-
<b>Phycomyces blakesleeanus NRRL1555</b>
 
-
<br> Rhizomucor miehei CBS 182.67
 
-
<br> Rhizomucor pusillus CBS 183.67
 
-
<br> <b>Rhizopus orzae RA 99-880</b>
 
-
</td>
 
-
</tr>
 
-
 
</table>
</table>

Latest revision as of 17:59, 4 September 2014

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Species of interest for the Genozymes project

NOTE: This tree is based on information from the NCBI Taxonomy Browser, MycoBank and Index Fungorum and new phylogeny studies in our group. Genomic sequencing is in progress as part of the Genozymes project for species followed by asterisk. New genome sequences released on the public site are shown in bold.

PhylumClassOrderName

->Ascomycota

->Dothideomycetes

->Dothidiales

Aureobasidium pullulans ATCC 62921 *

->Eurotiomycetes

->Eurotiales

Aspergillus niger ATCC 1015
Aspergillus niger NRRL3 *
Rasamsonia byssochlamydoides NRRL 3658 * (was Paecilomyces byssochlamydoides)
Rasamsonia emersonii NRRL 3221 * (was Talaromyces emersonii)
Thermoascus crustaceus CBS 181.67 * (was Thermoascus aurantiacus)
Thermoascus thermophilus ATCC 26413 * (was Dactylomyces thermophilus)
Thermomyces dupontii NRRL 2155 * (was Talaromyces thermophilus)
Thermomyces ibadanensis ATCC 22716
Thermomyces lanuginosus ATCC 200065 *

->Onygenales

Malbranchea cinnamomea CBS 343.55 *

->Leotiomycetes

->Helotiales

Amorphotheca resinae DAOM194228 *
Pseudocercosporella herpotrichoides CBS 494.80 * (Oculimacula yallundae)

->Sordariomycetes

->Sordariales

Chaetomium globosum CBS 148.51
Chaetomium olivicolor CBS 102434 *
Chaetomium thermophilum var. coprophilum ATCC 16451 *
Myceliophthora fergusii CBS 405.69 * (was Corynascus thermophilus)
Myceliophthora sepedonium ATCC 9787 * (was Corynascus sepedonium)
Humicola hyalothermophila CBS 454.80 *
Myceliophthora hinnulea ATCC 52474 *
Myceliophthora thermophila ATCC 42464 (was Sporotrichum thermophilum)
Myriococcum thermophilum CBS 398.93 *
Remersonia thermophila ATCC 22073 * (was Stilbella thermophila)
Scytalidium thermophilum CBS 625.91 *
Thielavia australiensis ATCC 28236 *
Thielavia terrestris NRRL 8126

->Glomerellales

Acremonium alcalophilum JCM 7366

->Hypocreales

Trichoderma reesei ATCC 56765

->Ophiostomatales

Ophiostoma piliferum FCC 55A

->unknown

Acremonium thermophilum ATCC 24622 *
Thermomyces stellatus CBS 241.64 *

->Basidiomycota

->Agaricomycetes

->Agaricales

Agaricus bisporus var. burnetti JB137-S8
Lentinula edodes ATCC 48564 *
Pleurotus ostreatus PC 15

->Gloeophyllales

Gloeophyllum trabeum ATCC 11539

->Polyporales

Phanerochaete chrysosporium RP78
Trametes versicolor ATCC 20869 *

->Neocallimastigomycota

->Neocallimastigomycetes

->Neocallimastigales

Anaeromyces mucronatus YE505
Neocallimastix patriciarum 27
Neocallimastix joyonii SG4 (Orpinomyces joyonii)
Piromyces rhizinflata YM600

->Mucoromycotina subphylum
(was Zygomycota)

->Incertae sedis

->Mucorales

Phycomyces blakesleeanus NRRL1555
Rhizomucor miehei CBS 182.67 *
Rhizomucor pusillus CBS 183.67 *
Rhizopus orzae RA 99-880

->Incertae sedis

Calcarisporiella thermophilum CBS 279.70 *

Oomycetes

->Oomycota

->Oomycetes

->Peronosporales

Phytophthora cinnamomi

->Pythiales

Pythium aphanidermatum

->Saprolegniales

Aphanomyces cochlioides

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